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This research introduces Simulation-Based Empirical Bayes (SBEB), a method designed to perform simultaneous inference when likelihoods are only accessible via simulators rather than explicit probability densities. By leveraging amortized inference networks, the approach refits EB priors iteratively using simulator samples and observed data, offering improved accuracy over standard simulation-based inference techniques with fixed priors. This advancement addresses critical challenges in scientific applications where tractable analytical models for latent variables are unavailable.
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Simulation-Based Empirical Bayes

arXiv2 min read

arXiv:2607.21843v1 Announce Type: cross Abstract: Empirical Bayes (EB) performs simultaneous inference across many related latent variables. Classical EB assumes that the likelihood p(x | z) is tractable. In many scientific applications, however, the likelihood is available only through a simulator. This paper develops EB for such implicit likelihoods. We introduce simulation-based empirical Bayes (SBEB), which connects nonparametric EB to simulation-based inference (SBI). SBEB computes EB estimates without an explicit density by using the observed data, simulator samples, and an amortized inference network. SBEB iteratively refines the fitted EB prior toward the population prior. With several scientific simulators and real-world data, we demonstrate that SBEB improves accuracy over SBI with a fixed prior.

Abstract:Empirical Bayes (EB) performs simultaneous inference across many related latent variables. Classical EB assumes that the likelihood p(x | z) is tractable. In many scientific applications, however, the likelihood is available only through a simulator. This paper develops EB for such implicit likelihoods. We introduce simulation-based empirical Bayes (SBEB), which connects nonparametric EB to simulation-based inference (SBI). SBEB computes EB estimates without an explicit density by using the observed data, simulator samples, and an amortized inference network. SBEB iteratively refines the fitted EB prior toward the population prior. With several scientific simulators and real-world data, we demonstrate that SBEB improves accuracy over SBI with a fixed prior.

Machine Learning (stat.ML); Machine Learning (cs.LG)

arXiv:2607.21843 [stat.ML]

(or arXiv:2607.21843v1 [stat.ML] for this version)

https://doi.org/10.48550/arXiv.2607.21843 Focus to learn more arXiv-issued DOI via DataCite (pending registration)

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Full text under the publisher's open licence · 204 words

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