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MERIT replaces the message-passing and random-walk machinery of recent knowledge graph foundation models with a transformer relation encoder, where motifs act as a soft prior rather than as graph edges. The reported result is that it matches the zero-shot link-prediction MRR of state-of-the-art models across 56 benchmarks while running several times faster at inference, with the speedup also extending to complex query answering. Readers should weigh these as the authors' self-reported benchmark numbers, but the cost-versus-accuracy trade-off is the main thing to watch if zero-shot graph reasoning is moving toward production use.
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MERIT: Scaling KG Foundation Models with Relation Transformers

arXiv2 min read

arXiv:2610.15638v1 Announce Type: new Abstract: Knowledge graph (KG) foundation models (KGFMs) predict links on unseen graphs zero-shot. KGFMs have been pioneered by ULTRA which builds a relation graph from co-occurrences that match motif templates, and passes messages over it to obtain relation representations. More recent KGFMs such as MOTIF and TRIX increase the size of this relation graph, and FLOCK replaces message-passing with probabilistic random-walk ensembles. However, larger relation graphs mean more messages, and more walks mean more sequences to encode, so they improve performance at higher training and inference cost. This cost hinders their use in more complex reasoning tasks, such as complex query answering. To reverse this trend, we design MERIT, the first KGFM with a transformer relation encoder: every relation name attends to every other, and the motifs enter as a soft prior rather than as edges. Over 56 benchmarks, MERIT matches the zero-shot MRR of SoTA KGFMs while being 6x faster than TRIX and over 100x faster than FLOCK at inference. Fine-tuned for complex query answering like UltraQuery, MERITQuery improves over it at matched cost.

Abstract:Knowledge graph (KG) foundation models (KGFMs) predict links on unseen graphs zero-shot. KGFMs have been pioneered by ULTRA which builds a relation graph from co-occurrences that match motif templates, and passes messages over it to obtain relation representations. More recent KGFMs such as MOTIF and TRIX increase the size of this relation graph, and FLOCK replaces message-passing with probabilistic random-walk ensembles. However, larger relation graphs mean more messages, and more walks mean more sequences to encode, so they improve performance at higher training and inference cost. This cost hinders their use in more complex reasoning tasks, such as complex query answering. To reverse this trend, we design MERIT, the first KGFM with a transformer relation encoder: every relation name attends to every other, and the motifs enter as a soft prior rather than as edges. Over 56 benchmarks, MERIT matches the zero-shot MRR of SoTA KGFMs while being 6x faster than TRIX and over 100x faster than FLOCK at inference. Fine-tuned for complex query answering like UltraQuery, MERITQuery improves over it at matched cost.

Machine Learning (cs.LG)

arXiv:2610.15638 [cs.LG]

(or arXiv:2610.15638v1 [cs.LG] for this version)

https://doi.org/10.48550/arXiv.2610.15638 Focus to learn more arXiv-issued DOI via DataCite (pending registration)

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Full text under the publisher's open licence · 268 words

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