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LuMamba introduces a self-supervised framework that addresses the quadratic complexity of Transformers in EEG modeling by integrating linear-complexity state-space blocks with topology-invariant encodings. Pre-trained on over 21,000 hours of unlabeled data, the model achieves state-of-the-art performance on multiple clinical tasks while requiring significantly fewer FLOPS and scaling to much longer sequences than current baselines. This approach offers a scalable path toward foundation models for biosignals that remain robust across varying electrode configurations.
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LuMamba: Latent Unified Mamba for Electrode Topology-Invariant and Efficient EEG Modeling

arXiv3 min read

arXiv:2603.19100v2 Announce Type: replace Abstract: Electroencephalography (EEG) enables non-invasive monitoring of brain activity across clinical and neurotechnology applications, yet building foundation models for EEG remains challenging due to differing electrode topologies and computational scalability, as Transformer architectures incur quadratic sequence complexity. As a joint solution, we propose LuMamba (Latent Unified Mamba), a self-supervised framework combining topology-invariant encodings with linear-complexity state-space modeling, using LUNA's learned-query cross-attention mechanism for channel unification, and FEMBA's bidirectional Mamba blocks for efficient temporal modeling. Within this architecture, we provide the first systematic investigation of the Latent-Euclidean Joint-Embedding Predictive Architecture (LeJEPA) for biosignal learning. Pre-trained on over 21,000 hours of unlabeled EEG from the TUEG corpus, LuMamba is evaluated on five downstream tasks spanning abnormality detection, artifact recognition, and mental condition classification across electrode configurations ranging from 16 to 26 channels. In the pre-training objective, masked reconstruction alone yields structured but less generalizable representations, while LeJEPA alone produces diffuse embeddings; combining both objectives achieves the most robust performance. With only 4.6M parameters, LuMamba attains 80.99% balanced accuracy on TUAB and achieves state-of-art performance on Alzheimer's detection (0.97 AUPR), while requiring 377x fewer FLOPS than state-of-art models at equivalent sequence lengths and scaling to 12x longer sequences before reaching typical GPU memory limits. Code is available at https://github.com/pulp-bio/biofoundation.

Abstract:Electroencephalography (EEG) enables non-invasive monitoring of brain activity across clinical and neurotechnology applications, yet building foundation models for EEG remains challenging due to differing electrode topologies and computational scalability, as Transformer architectures incur quadratic sequence complexity. As a joint solution, we propose LuMamba (Latent Unified Mamba), a self-supervised framework combining topology-invariant encodings with linear-complexity state-space modeling, using LUNA's learned-query cross-attention mechanism for channel unification, and FEMBA's bidirectional Mamba blocks for efficient temporal modeling. Within this architecture, we provide the first systematic investigation of the Latent-Euclidean Joint-Embedding Predictive Architecture (LeJEPA) for biosignal learning. Pre-trained on over 21,000 hours of unlabeled EEG from the TUEG corpus, LuMamba is evaluated on five downstream tasks spanning abnormality detection, artifact recognition, and mental condition classification across electrode configurations ranging from 16 to 26 channels. In the pre-training objective, masked reconstruction alone yields structured but less generalizable representations, while LeJEPA alone produces diffuse embeddings; combining both objectives achieves the most robust performance. With only 4.6M parameters, LuMamba attains 80.99% balanced accuracy on TUAB and achieves state-of-art performance on Alzheimer's detection (0.97 AUPR), while requiring 377x fewer FLOPS than state-of-art models at equivalent sequence lengths and scaling to 12x longer sequences before reaching typical GPU memory limits. Code is available at this https URL.

Artificial Intelligence (cs.AI)

arXiv:2603.19100 [cs.AI]

(or arXiv:2603.19100v2 [cs.AI] for this version)

https://doi.org/10.48550/arXiv.2603.19100 Focus to learn more arXiv-issued DOI via DataCite

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Full text under the publisher's open licence · 299 words

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