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This research addresses a critical gap in medical AI by developing M3LLM, which leverages large-scale compound figures from biomedical literature to enable reasoning across multiple images and modalities. The proposed three-stage training framework successfully outperforms existing models on complex tasks involving longitudinal data and cross-view analysis, demonstrating that literature-derived supervision can significantly enhance multimodal capabilities.
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From Compound Figures to Medical Multi-image Reasoning: Scaling Multimodal Large Language Models with Biomedical Literature

arXiv3 min read

arXiv:2511.22232v2 Announce Type: replace-cross Abstract: Multimodal large language models (MLLMs) are increasingly capable in medical imaging, yet most focus on single-image settings. Clinical interpretation often requires integrating evidence across multiple images, such as different modalities, views, or time points. However, large-scale medical multi-image data and training strategies for such reasoning remain limited. We construct PMC-MI, a large-scale resource comprising 234,956 instruction instances derived from biomedical compound figures, with 10,555 multi-subimage instances structured for reinforcement learning and assessed by medical reviewers. We also introduce PMC-MI-Bench, a manually reviewed benchmark separated at the source-article level. We further propose a three-stage training framework, instantiated as M3LLM, combining supervised fine-tuning on multi-image instructions, selection-aware reinforcement learning for question-conditioned visual-evidence selection, and supervised consolidation on a broader instruction mixture. Evaluating M3LLM on PMC-MI-Bench, two public medical benchmarks, longitudinal chest radiographs, and a retrospective dermatology cohort reveals it achieves the highest performance among representative MLLMs. On PMC-MI-Bench, M3LLM scored 81.6, 84.6, and 85.2 on single-subimage, multi-subimage, and relative-position tasks, respectively, outperforming the strongest baselines (75.6, 79.1, and 77.6). It also set new records on the provenance-screened OmniMedVQA (88.6%) and MMMU-Med (68.0%), alongside top performance in two clinical settings after task-specific adaptation. These findings support using literature-derived multi-image supervision and targeted post-training for medical multi-image MLLMs. Data and code are publicly available.

Abstract:Multimodal large language models (MLLMs) are increasingly capable in medical imaging, yet most focus on single-image settings. Clinical interpretation often requires integrating evidence across multiple images, such as different modalities, views, or time points. However, large-scale medical multi-image data and training strategies for such reasoning remain limited. We construct PMC-MI, a large-scale resource comprising 234,956 instruction instances derived from biomedical compound figures, with 10,555 multi-subimage instances structured for reinforcement learning and assessed by medical reviewers. We also introduce PMC-MI-Bench, a manually reviewed benchmark separated at the source-article level. We further propose a three-stage training framework, instantiated as M3LLM, combining supervised fine-tuning on multi-image instructions, selection-aware reinforcement learning for question-conditioned visual-evidence selection, and supervised consolidation on a broader instruction mixture. Evaluating M3LLM on PMC-MI-Bench, two public medical benchmarks, longitudinal chest radiographs, and a retrospective dermatology cohort reveals it achieves the highest performance among representative MLLMs. On PMC-MI-Bench, M3LLM scored 81.6, 84.6, and 85.2 on single-subimage, multi-subimage, and relative-position tasks, respectively, outperforming the strongest baselines (75.6, 79.1, and 77.6). It also set new records on the provenance-screened OmniMedVQA (88.6%) and MMMU-Med (68.0%), alongside top performance in two clinical settings after task-specific adaptation. These findings support using literature-derived multi-image supervision and targeted post-training for medical multi-image MLLMs. Data and code are publicly available.

Computer Vision and Pattern Recognition (cs.CV); Artificial Intelligence (cs.AI); Computation and Language (cs.CL)

arXiv:2511.22232 [cs.CV]

(or arXiv:2511.22232v2 [cs.CV] for this version)

https://doi.org/10.48550/arXiv.2511.22232 Focus to learn more arXiv-issued DOI via DataCite

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