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DR-SNE introduces a density-regularization technique to Stochastic Neighbor Embedding, addressing known distortions in local data distributions during dimensionality reduction. By aligning neighborhood-scale profiles between original and embedded spaces, this method offers a more faithful representation of relative local concentrations without sacrificing neighborhood fidelity. This advancement is particularly relevant for researchers developing high-fidelity visualizations and representations where preserving specific data density variations is critical.
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DR-SNE: Density-Regularized Stochastic Neighbor Embedding

arXiv2 min read

arXiv:2605.02060v2 Announce Type: replace Abstract: Dimensionality-reduction methods such as t-SNE preserve local neighborhood structure but can substantially distort the local distribution of data. We introduce Density-Regularized Stochastic Neighbor Embedding (DR-SNE), which augments stochastic neighbor embedding with a regularizer that directly aligns normalized inverse-neighborhood-scale profiles between the original and embedding spaces. The resulting objective preserves relative local concentration while remaining invariant to global rescaling of the embedding. Across real and synthetic datasets, DR-SNE generally improves preservation of the targeted concentration profile while maintaining controlled levels of neighborhood fidelity. Experiments reveal a consistent empirical trade-off between concentration preservation and neighborhood fidelity as the regularization strength varies. These results position DR-SNE as a simple extension of SNE for settings in which relative variation in local concentration is an important property of the representation.

Abstract:Dimensionality-reduction methods such as t-SNE preserve local neighborhood structure but can substantially distort the local distribution of data. We introduce Density-Regularized Stochastic Neighbor Embedding (DR-SNE), which augments stochastic neighbor embedding with a regularizer that directly aligns normalized inverse-neighborhood-scale profiles between the original and embedding spaces. The resulting objective preserves relative local concentration while remaining invariant to global rescaling of the embedding. Across real and synthetic datasets, DR-SNE generally improves preservation of the targeted concentration profile while maintaining controlled levels of neighborhood fidelity. Experiments reveal a consistent empirical trade-off between concentration preservation and neighborhood fidelity as the regularization strength varies. These results position DR-SNE as a simple extension of SNE for settings in which relative variation in local concentration is an important property of the representation.

Machine Learning (cs.LG)

arXiv:2605.02060 [cs.LG]

(or arXiv:2605.02060v2 [cs.LG] for this version)

https://doi.org/10.48550/arXiv.2605.02060 Focus to learn more arXiv-issued DOI via DataCite

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Full text under the publisher's open licence · 217 words

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