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This study reveals that reported Transformer superiority in intrusion detection is largely an artifact of evaluation methodology rather than architectural advantage, as performance collapses significantly under realistic, leakage-free conditions. While Transformers achieve high scores on padded, non-sequential data, simpler models like Random Forests demonstrate superior robustness and lower false-alarm rates when tested on genuine temporal sequences. The research underscores the critical need for standardized, sequence-aware benchmarking protocols to prevent overestimating model reliability in security applications.
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Do Transformers Actually Help Intrusion Detection? A Temporal Sequence Evaluation on CIC-IDS2017

arXiv3 min read

arXiv:2606.11098v1 Announce Type: cross Abstract: Recent deep learning approaches for network intrusion detection increasingly incorporate temporal architectures such as recurrent networks and Transformers, often reporting near-perfect performance on CIC-IDS2017. However, many existing studies neither supply their temporal modules with genuine sequence inputs nor evaluate under realistic, leakage-free conditions, making it unclear whether reported gains arise from true sequence-modeling capability. In this work, we reformulate CIC-IDS2017 as a temporal intrusion-detection task by constructing ordered flow sequences from network conversations and benchmarking nine classical and deep learning architectures under a random split, two leakage-free splits, and a padding-scheme ablation. The central finding is that padding convention, not architecture, determines the Transformer's performance: on genuinely sequential (non-padded) windows the Transformer achieves the highest macro-F1 of any model in the experiment (0.89); under zero-pad+mask evaluation it drops markedly (-0.24 macro-F1), while LSTM, GRU, and 1D-CNN remain stable. Under leakage-free group evaluation the Random Forest is the most robust model (+0.009), while the Transformer's false-alarm rate grows from 0.04% to 2.7%, a 67-fold increase invisible under conventional protocols. These findings demonstrate that evaluation methodology -- specifically padding convention and split protocol -- has a larger effect on reported performance than architectural choice, and that widely used random splits with repeat-last padding can overestimate model robustness by up to 0.24 macro-F1. We advocate leakage-free splits, explicit padding disclosure, and sequence-aware benchmarking as standard practice in future IDS research. Code and implementation details are available at https://github.com/zachmocz/temporal-ids-bench.

Title:Do Transformers Actually Help Intrusion Detection? A Temporal Sequence Evaluation on CIC-IDS2017

Abstract:Recent deep learning approaches for network intrusion detection increasingly incorporate temporal architectures such as recurrent networks and Transformers, often reporting near-perfect performance on CIC-IDS2017. However, many existing studies neither supply their temporal modules with genuine sequence inputs nor evaluate under realistic, leakage-free conditions, making it unclear whether reported gains arise from true sequence-modeling capability. In this work, we reformulate CIC-IDS2017 as a temporal intrusion-detection task by constructing ordered flow sequences from network conversations and benchmarking nine classical and deep learning architectures under a random split, two leakage-free splits, and a padding-scheme ablation. The central finding is that padding convention, not architecture, determines the Transformer's performance: on genuinely sequential (non-padded) windows the Transformer achieves the highest macro-F1 of any model in the experiment (0.89); under zero-pad+mask evaluation it drops markedly (-0.24 macro-F1), while LSTM, GRU, and 1D-CNN remain stable. Under leakage-free group evaluation the Random Forest is the most robust model (+0.009), while the Transformer's false-alarm rate grows from 0.04% to 2.7%, a 67-fold increase invisible under conventional protocols. These findings demonstrate that evaluation methodology -- specifically padding convention and split protocol -- has a larger effect on reported performance than architectural choice, and that widely used random splits with repeat-last padding can overestimate model robustness by up to 0.24 macro-F1. We advocate leakage-free splits, explicit padding disclosure, and sequence-aware benchmarking as standard practice in future IDS research. Code and implementation details are available at this https URL.

11 pages, 9 figures, 9 tables. Preprint. Code: this https URL

Cryptography and Security (cs.CR); Machine Learning (cs.LG)

arXiv:2606.11098 [cs.CR]

(or arXiv:2606.11098v1 [cs.CR] for this version)

https://doi.org/10.48550/arXiv.2606.11098 Focus to learn more arXiv-issued DOI via DataCite (pending registration)

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Full text under the publisher's open licence · 358 words

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