aiqbench analysis
This study benchmarks a token-conditioned GPT2 model for generating OLED molecules, demonstrating that while directional control over optical properties is achievable in low-data regimes, reliability varies significantly based on local electronic environments. The analysis reveals that controllability is not fully orthogonal and exhibits calibration irregularities, particularly with electron-withdrawing motifs like aryl nitriles, which show systematic red-shifting. Consequently, model performance must be evaluated within chemically meaningful subspaces rather than relying solely on aggregate property distributions.
De novo molecular generation with optical property preconditioning at the token level
arXiv:2606.08221v1 Announce Type: new Abstract: Designing OLED molecules with targeted optical properties remains challenging due to the scarcity of high-quality data and the limited reliability of conditional control in generative models across chemical motifs. Here, we benchmark a token-conditioned autoregressive language model for OLED molecular generation in a realistic low-data regime. A GPT2 model is pretrained on large chemical corpora, augmented with discrete property tokens, and fine-tuned using multi-task optimisation. Conditioning targets vertical absorption energy and oscillator strength, with the HOMO-LUMO gap included as an auxiliary electronic descriptor. Generated molecules are evaluated at the TDDFT level to assess distributional fidelity and controllability. The generated library reproduces the dominant optical-property support of the training distribution while shifting towards lower molecular weight and fewer heavy atoms. Token-level control is consistently directional across conditioning bins, but is not fully orthogonal and exhibits local calibration irregularities. A chemotype-resolved analysis further shows that controllability depends strongly on local electronic environments: moderately conjugated aromatic-carbon motifs are associated with improved joint target satisfaction, whereas electron-withdrawing motifs, particularly aryl nitriles, show systematic red-shifting and reduced controllability. These results establish a quantitative benchmark for conditional OLED molecular generation and show that model reliability must be assessed in chemically meaningful subspaces rather than from aggregate property distributions alone.
Abstract:Designing OLED molecules with targeted optical properties remains challenging due to the scarcity of high-quality data and the limited reliability of conditional control in generative models across chemical motifs. Here, we benchmark a token-conditioned autoregressive language model for OLED molecular generation in a realistic low-data regime. A GPT2 model is pretrained on large chemical corpora, augmented with discrete property tokens, and fine-tuned using multi-task optimisation. Conditioning targets vertical absorption energy and oscillator strength, with the HOMO-LUMO gap included as an auxiliary electronic descriptor. Generated molecules are evaluated at the TDDFT level to assess distributional fidelity and controllability. The generated library reproduces the dominant optical-property support of the training distribution while shifting towards lower molecular weight and fewer heavy atoms. Token-level control is consistently directional across conditioning bins, but is not fully orthogonal and exhibits local calibration irregularities. A chemotype-resolved analysis further shows that controllability depends strongly on local electronic environments: moderately conjugated aromatic-carbon motifs are associated with improved joint target satisfaction, whereas electron-withdrawing motifs, particularly aryl nitriles, show systematic red-shifting and reduced controllability. These results establish a quantitative benchmark for conditional OLED molecular generation and show that model reliability must be assessed in chemically meaningful subspaces rather than from aggregate property distributions alone.
Machine Learning (cs.LG)
arXiv:2606.08221 [cs.LG]
(or arXiv:2606.08221v1 [cs.LG] for this version)
https://doi.org/10.48550/arXiv.2606.08221 Focus to learn more arXiv-issued DOI via DataCite (pending registration)
arXivLabs is a framework that allows collaborators to develop and share new arXiv features directly on our website.
Both individuals and organizations that work with arXivLabs have embraced and accepted our values of openness, community, excellence, and user data privacy. arXiv is committed to these values and only works with partners that adhere to them.
Have an idea for a project that will add value for arXiv's community? Learn more about arXivLabs.
Full text under the publisher's open licence · 297 words
Related coverage
PairIT: Autoregressive Transformers for Low-Data Molecule Optimization
arXiv · Oct 15, 2026
Refine Drugs, Don't Complete Them: Uniform-Source Discrete Flows for Fragment-Based Drug Discovery
arXiv · Aug 4, 2026

Game Design Creativity evals
LessWrong · Oct 12, 2026
A Large Scale Investigation of Scaling Limits in Chemical Language Models
arXiv · Oct 2, 2026