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This study addresses a critical bottleneck in deploying large language models within electronic health records by demonstrating that closed-loop validation-repair frameworks can elevate schema compliance to over 99%. The research reveals that most failures stem from representation-level format violations rather than fundamental reasoning deficits, suggesting these issues are solvable through iterative system safeguards. For AI practitioners building clinical tools, this work provides a practical pathway to ensure interoperability with standardized medical schemas like ICD-10 and HL7 FHIR without relying on model-specific architectural changes.
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Closed-Loop Validation-Repair for Healthcare Interoperability: A Multi-Model Study of Schema Compliance in Clinical LLMs

arXiv3 min read

arXiv:2607.24371v1 Announce Type: cross Abstract: Healthcare interoperability requires AI systems to produce structured outputs conforming to standardized schemas including ICD-10 for diagnostic coding, CPT for procedure billing, and HL7 FHIR for data exchange. While large language models demonstrate clinical reasoning capabilities, their integration into electronic health record systems faces a critical barrier: schema noncompliance. We evaluate three open-source models, Qwen2.5 7B, Llama 3.1 8B, and Gemma2 9B, via local deployment across 320 clinical scenarios spanning ten medical specialties, yielding 960 model-scenario pairs assessed under paired baseline and validation-repair conditions. First, schema noncompliance is consistent across the three model families, with baseline compliance rates ranging from 85.9 to 91.6 percent despite varying architectures and training data, suggesting shared gaps in medical training corpora rather than model-specific limitations. Second, 96 percent of validator-detected failures are representation-level format violations such as alternative medical abbreviations and code prefixes, indicating models follow clinical writing conventions but lack awareness of healthcare IT standards. Third, the validation-repair framework achieves 99.0 percent overall compliance, ranging from 98.4 to 99.4 percent across models, with most errors resolving within one or two iterations. Exact McNemar p-values below 0.001 and absolute improvements of 7.8 to 12.5 percentage points across model sizes confirm statistical significance. These results support closed-loop validation-repair as an effective system-level safeguard for healthcare interoperability, improving schema-level readiness for downstream clinical system integration.

Abstract:Healthcare interoperability requires AI systems to produce structured outputs conforming to standardized schemas including ICD-10 for diagnostic coding, CPT for procedure billing, and HL7 FHIR for data exchange. While large language models demonstrate clinical reasoning capabilities, their integration into electronic health record systems faces a critical barrier: schema noncompliance. We evaluate three open-source models, Qwen2.5 7B, Llama 3.1 8B, and Gemma2 9B, via local deployment across 320 clinical scenarios spanning ten medical specialties, yielding 960 model-scenario pairs assessed under paired baseline and validation-repair conditions. First, schema noncompliance is consistent across the three model families, with baseline compliance rates ranging from 85.9 to 91.6 percent despite varying architectures and training data, suggesting shared gaps in medical training corpora rather than model-specific limitations. Second, 96 percent of validator-detected failures are representation-level format violations such as alternative medical abbreviations and code prefixes, indicating models follow clinical writing conventions but lack awareness of healthcare IT standards. Third, the validation-repair framework achieves 99.0 percent overall compliance, ranging from 98.4 to 99.4 percent across models, with most errors resolving within one or two iterations. Exact McNemar p-values below 0.001 and absolute improvements of 7.8 to 12.5 percentage points across model sizes confirm statistical significance. These results support closed-loop validation-repair as an effective system-level safeguard for healthcare interoperability, improving schema-level readiness for downstream clinical system integration.

Computation and Language (cs.CL); Artificial Intelligence (cs.AI)

arXiv:2607.24371 [cs.CL]

(or arXiv:2607.24371v1 [cs.CL] for this version)

https://doi.org/10.48550/arXiv.2607.24371 Focus to learn more arXiv-issued DOI via DataCite (pending registration)

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Full text under the publisher's open licence · 317 words

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