aiqbench analysis
ChemBART advances computer-aided synthesis planning by shifting from single-molecule representations to a reaction-centric pre-training strategy using BART. This approach unifies diverse chemical tasks and integrates with Monte Carlo tree search to optimize multi-step synthetic routes, which were validated in wet labs showing over 20% yield improvements.
ChemBART: Pre-training a Reaction Language Model for Comprehensive Synthesis Planning
arXiv:2601.02915v2 Announce Type: cross Abstract: Recent advances in large language models (LLMs) have demonstrated transformative potential across diverse fields. However, in computer-aided synthesis planning (CASP), current LLM methodologies are often restricted to single-molecule representations, limiting their application to isolated, single-task scenarios such as precursor prediction. Addressing this gap, we present ChemBART, a BART-based language model that adopts a reaction-centric pre-training strategy. By leveraging a mask-filling pre-training task on holistic reaction expressions (Reactant > Reagent > Product), ChemBART effectively solves a variety of chemical problems, including precursor/reagent generation, temperature-yield regression, and molecular property classification. Building on these capabilities, we demonstrate the integration of ChemBART with Monte Carlo tree search (MCTS) for multi-step synthesis route design, where the model serves to optimize the policy and value functions within a reinforcement learning framework. Beyond single-molecule pre-trained LLMs that are constrained to specific applications, ChemBART unifies diverse chemical tasks to facilitate synthesis planning with comprehensive implementation information. Most significantly, the proposed multi-step synthesis routes and reaction conditions were validated in the wet lab, confirming the discovery of shorter synthetic pathways with a >20% yield improvement over established literature benchmarks. Our work highlights the potential of reaction-focused pre-training and showcases the broad utility of ChemBART in closing the loop between in silico prediction and wet-lab synthesis.
Abstract:Recent advances in large language models (LLMs) have demonstrated transformative potential across diverse fields. However, in computer-aided synthesis planning (CASP), current LLM methodologies are often restricted to single-molecule representations, limiting their application to isolated, single-task scenarios such as precursor prediction. Addressing this gap, we present ChemBART, a BART-based language model that adopts a reaction-centric pre-training strategy. By leveraging a mask-filling pre-training task on holistic reaction expressions (Reactant > Reagent > Product), ChemBART effectively solves a variety of chemical problems, including precursor/reagent generation, temperature-yield regression, and molecular property classification. Building on these capabilities, we demonstrate the integration of ChemBART with Monte Carlo tree search (MCTS) for multi-step synthesis route design, where the model serves to optimize the policy and value functions within a reinforcement learning framework. Beyond single-molecule pre-trained LLMs that are constrained to specific applications, ChemBART unifies diverse chemical tasks to facilitate synthesis planning with comprehensive implementation information. Most significantly, the proposed multi-step synthesis routes and reaction conditions were validated in the wet lab, confirming the discovery of shorter synthetic pathways with a >20% yield improvement over established literature benchmarks. Our work highlights the potential of reaction-focused pre-training and showcases the broad utility of ChemBART in closing the loop between in silico prediction and wet-lab synthesis.
Under peer review. 31 pages, 6 figures, 2 tables
Machine Learning (cs.LG)
arXiv:2601.02915 [cs.LG]
(or arXiv:2601.02915v2 [cs.LG] for this version)
https://doi.org/10.48550/arXiv.2601.02915 Focus to learn more arXiv-issued DOI via DataCite
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