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This paper addresses a critical methodological flaw in evaluating AI models for digital pathology, where changing reference frames during candidate filtering can artificially alter model performance metrics and reverse comparative rankings. The authors introduce CHARTER, a framework that enforces explicit declaration of evaluation targets to audit the stability of conclusions against these reference-induced shifts. This work is essential for establishing robust, reproducible standards in machine learning research within computational pathology.
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CHARTER: Auditing Reference Substitution in Hierarchical Compact-Evidence Evaluation for Computational Pathology

arXiv2 min read

arXiv:2610.07843v1 Announce Type: cross Abstract: In digital pathology, compact evidence is often used to explain or audit predictions made by whole-slide image multiple instance learning models. In hierarchical compact-evidence pipelines, candidate filtering introduces a strategy-specific candidate-conditioned prediction alongside the original full-bag prediction. If the evaluation reference changes while the intended target remains the original full-bag prediction, however, not only can the measured fidelity of the same compact evidence change, but comparisons between competing candidate strategies can also change. To make this dependence explicit, we introduce CHARTER, a reference-aware evaluation charter that asks researchers to DECLARE the intended target and reference, QUANTIFY candidate-induced prediction shift, and AUDIT the stability of comparative conclusions. Across the 15 comparisons in our main five-seed Random-K audit, 4 showed determinate reversals; in a matched native-ranking stress test, the ACMIL comparison changed from REVERSED to PRESERVED. CHARTER turns otherwise implicit candidate-filtering and reference choices into an auditable evaluation specification, helping distinguish genuine preservation of the intended prediction from apparent gains induced by changing the prediction being explained.

Abstract:In digital pathology, compact evidence is often used to explain or audit predictions made by whole-slide image multiple instance learning models. In hierarchical compact-evidence pipelines, candidate filtering introduces a strategy-specific candidate-conditioned prediction alongside the original full-bag prediction. If the evaluation reference changes while the intended target remains the original full-bag prediction, however, not only can the measured fidelity of the same compact evidence change, but comparisons between competing candidate strategies can also change. To make this dependence explicit, we introduce CHARTER, a reference-aware evaluation charter that asks researchers to DECLARE the intended target and reference, QUANTIFY candidate-induced prediction shift, and AUDIT the stability of comparative conclusions. Across the 15 comparisons in our main five-seed Random-K audit, 4 showed determinate reversals; in a matched native-ranking stress test, the ACMIL comparison changed from REVERSED to PRESERVED. CHARTER turns otherwise implicit candidate-filtering and reference choices into an auditable evaluation specification, helping distinguish genuine preservation of the intended prediction from apparent gains induced by changing the prediction being explained.

Computer Vision and Pattern Recognition (cs.CV); Machine Learning (cs.LG)

arXiv:2610.07843 [cs.CV]

(or arXiv:2610.07843v1 [cs.CV] for this version)

https://doi.org/10.48550/arXiv.2610.07843 Focus to learn more arXiv-issued DOI via DataCite (pending registration)

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Full text under the publisher's open licence · 265 words

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