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CAFE introduces a transformer-based amortized inference framework designed to approximate Bayesian counterfactual posterior predictive distributions, effectively addressing structural uncertainty in additive noise models. By pretraining on diverse synthetic tasks, the method enables single forward-pass predictions that remain robust even when observational data is compatible with multiple causal graphs. This advancement offers a practical solution for reliable individual outcome estimation under interventions without requiring explicit identification of the underlying causal structure.
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CAFE: Counterfactual Prediction via Fast Posterior Estimation

arXiv2 min read

arXiv:2609.32167v1 Announce Type: new Abstract: Counterfactual prediction estimates an individual's outcome under an alternative intervention given their factual observations. Such outcomes are generally not identifiable from observational data without additional assumptions. Even within the class of fully observed additive noise models (ANMs), different causal graphs can generate the same observational distribution yet imply different individual counterfactual outcomes. Predictions based on a single estimated graph ignore this structural uncertainty. We therefore target a Bayesian counterfactual posterior predictive distribution that combines predictions from plausible SCMs. We introduce CAFE (\textbf{C}ounterf\textbf{A}ctual Prediction via \textbf{F}ast Posterior \textbf{E}stimation), an amortized inference framework that directly approximates the Bayesian counterfactual posterior predictive distribution. We pretrain a transformer-based model on synthetic counterfactual tasks generated from a diverse prior over ANMs. Given an observational dataset, an individual's factual observations, and an intervention, CAFE approximates the corresponding posterior predictive distribution in a single forward pass. Experiments show that CAFE accurately predicts individual counterfactual outcomes in identifiable settings and approximates the posterior predictive distribution when structural uncertainty induced by observationally indistinguishable causal graphs exists. Strong performance in realistic manufacturing and viticulture settings further demonstrates its empirical robustness beyond the assumptions of the training prior.

Abstract:Counterfactual prediction estimates an individual's outcome under an alternative intervention given their factual observations. Such outcomes are generally not identifiable from observational data without additional assumptions. Even within the class of fully observed additive noise models (ANMs), different causal graphs can generate the same observational distribution yet imply different individual counterfactual outcomes. Predictions based on a single estimated graph ignore this structural uncertainty. We therefore target a Bayesian counterfactual posterior predictive distribution that combines predictions from plausible SCMs. We introduce CAFE (\textbf{C}ounterf\textbf{A}ctual Prediction via \textbf{F}ast Posterior \textbf{E}stimation), an amortized inference framework that directly approximates the Bayesian counterfactual posterior predictive distribution. We pretrain a transformer-based model on synthetic counterfactual tasks generated from a diverse prior over ANMs. Given an observational dataset, an individual's factual observations, and an intervention, CAFE approximates the corresponding posterior predictive distribution in a single forward pass. Experiments show that CAFE accurately predicts individual counterfactual outcomes in identifiable settings and approximates the posterior predictive distribution when structural uncertainty induced by observationally indistinguishable causal graphs exists. Strong performance in realistic manufacturing and viticulture settings further demonstrates its empirical robustness beyond the assumptions of the training prior.

Machine Learning (cs.LG)

arXiv:2609.32167 [cs.LG]

(or arXiv:2609.32167v1 [cs.LG] for this version)

https://doi.org/10.48550/arXiv.2609.32167 Focus to learn more arXiv-issued DOI via DataCite (pending registration)

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Full text under the publisher's open licence · 281 words

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