aiqbench analysis
This research addresses a critical bottleneck in biomedical multimodal AI by introducing context-grounded reconstruction to create coherent training corpora from PubMed Central records. By enforcing referential links between figures and text rather than treating them as isolated pairs, the method yields significant performance gains for medical large language models without simply scaling raw data volume. The findings underscore that high-quality, structurally sound datasets are more impactful than mere token count increases in specialized domains like healthcare AI.
Beyond Captions: Context-Grounded Reconstruction for Biomedical Multimodal Continued Pretraining
arXiv:2606.01049v2 Announce Type: replace Abstract: Biomedical figures are explained not by captions alone but by body-text passages that discuss them. Yet current multimodal corpora typically reduce figures to isolated image-caption pairs, discarding this crucial context. Existing pipelines either omit this context or append it without enforcing the figure references that support each attachment, which can create unsupported image-text attachments and incoherent discourse. We introduce context-grounded reconstruction, a source-grounded framework that converts PubMed Central Open Access (PMC-OA) records into referentially coherent interleaved sequences. It recovers captions and source text, attaches context only through article-native figure references, repairs non-contiguous context, and prunes unsupported images. Starting from these reconstructed sequences, PMC-InterCPT first filters records for text quality and medical relevance, then applies evidence-aware allocation to form a 9.63B-token corpus for continued pretraining (CPT) of generative medical MLLMs. With fixed supervised fine-tuning (SFT), PMC-InterCPT improves Qwen3.5-4B-Base by 1.46 medical-average points and 3.11 general/scientific-average points over a token-matched raw source control, and surpasses a 42% larger raw-data run. Gains transfer to Qwen3.5-2B-Base and LLaVA-OneVision-1.5-4B-Base. Controlled ablations show that context-grounded reconstruction, rather than simply appending article context or scaling raw data, is central to useful biomedical multimodal CPT.
Abstract:Biomedical figures are explained not by captions alone but by body-text passages that discuss them. Yet current multimodal corpora typically reduce figures to isolated image-caption pairs, discarding this crucial context. Existing pipelines either omit this context or append it without enforcing the figure references that support each attachment, which can create unsupported image-text attachments and incoherent discourse. We introduce context-grounded reconstruction, a source-grounded framework that converts PubMed Central Open Access (PMC-OA) records into referentially coherent interleaved sequences. It recovers captions and source text, attaches context only through article-native figure references, repairs non-contiguous context, and prunes unsupported images. Starting from these reconstructed sequences, PMC-InterCPT first filters records for text quality and medical relevance, then applies evidence-aware allocation to form a 9.63B-token corpus for continued pretraining (CPT) of generative medical MLLMs. With fixed supervised fine-tuning (SFT), PMC-InterCPT improves Qwen3.5-4B-Base by 1.46 medical-average points and 3.11 general/scientific-average points over a token-matched raw source control, and surpasses a 42% larger raw-data run. Gains transfer to Qwen3.5-2B-Base and LLaVA-OneVision-1.5-4B-Base. Controlled ablations show that context-grounded reconstruction, rather than simply appending article context or scaling raw data, is central to useful biomedical multimodal CPT.
Computation and Language (cs.CL)
arXiv:2606.01049 [cs.CL]
(or arXiv:2606.01049v2 [cs.CL] for this version)
https://doi.org/10.48550/arXiv.2606.01049 Focus to learn more arXiv-issued DOI via DataCite
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Full text under the publisher's open licence · 280 words
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