protein-structure
De la autor
Analyzes protein structures from PDB files: parses ATOM/HETATM records with a dependency-free pure-Python parser, computes radius of gyration, gyration tensor and dipole moments, assigns secondary structure via DSSP or a built-in Kabsch-Sander hydrogen-bond implementation, and optionally retrieves UniProt metadata. This skill should be used when secondary structure assignment, Rg, shape analysis, DSSP, PDB parsing or protein structure annotation is requested.
Instalare
npx skills add ssinder/bioinformatics-agent-skills --skill protein-structure -a claude-code
Se instalează în .claude/skills/protein-structure/ · Fiecare comandă descarcă skill-ul direct de pe GitHub cu utilitarul open source skills.
Identic octet cu octet cu commit-ul scanat, cu licența depozitului și un fișier SOURCE.txt.
Vrei ca agentul să-ți propună skill-uri în timp ce scrii? Vezi cum folosești skill-urile din IDE.
Verificări de siguranță pe SKILL.md
- Include scripturi pe care nu le-am verificatScăzut
De ce 76
aiqbench calculează scorul de încredere din semnale publice. Nu este un audit de securitate, așa că citește un skill înainte să-l instalezi.
Skill-uri similare
Cele mai apropiate de acesta prin ce fac și când sunt folosite.
- pdbBioTender-max/awesome-bio-agent-skillsFetch and analyze protein structures from RCSB PDB. Use this skill when: (1) Need to download a structure by PDB ID, (2) Search for similar structures, (3) Prepare target for binder design, (4) Extract specific chains or domains, (5) Get structure metadata. For sequence lookup, use uniprot. For binder design workflow, use binder-design.Design★ 214
- protein-structure-analysisawslabs/hcls-agent-skillsPipeline skill for protein structure analysis covering PDB/mmCIF parsing, RMSD superposition, Ramachandran/dihedral analysis, binding pocket detection, contact maps, B-factor flexibility, DSSP secondary structure, and format conversion. Triggers on PDB, protein structure, RMSD, Ramachandran, binding pocket, Biopython, PyMOL, pocket detection, fpocket, DSSP, PDBQT, structural alignment, superposition.Știință★ 71
- uniprotBioTender-max/awesome-bio-agent-skillsAccess UniProt for protein sequence and annotation retrieval. Use this skill when: (1) Looking up protein sequences by accession, (2) Finding functional annotations, (3) Getting domain boundaries, (4) Finding homologs and variants, (5) Cross-referencing to PDB structures. For structure retrieval, use pdb. For sequence design, use proteinmpnn.Design★ 214
- uniprot-rcsbK-Dense-AI/drug-discovery-agent-skillsRetrieve protein sequences, annotation, and structures from UniProtKB, the RCSB PDB, and AlphaFold DB. Use this skill to resolve a gene or protein name to a UniProt accession, pull sequences and FASTA files, find binding sites and domains, search the PDB by UniProt accession, sequence, ligand, or text, download mmCIF/PDB coordinates and biological assemblies, fetch AlphaFold models with their pLDDT confidence, and check whether a structure is actually usable before docking or simulating it. Also trigger on UniProt accessions, PDB ids, rest.uniprot.org, search.rcsb.org, files.rcsb.org, alphafold.ebi.ac.uk, id mapping, SEQRES, or missing residues.Știință★ 51
- query-pdbBioTender-max/awesome-bio-agent-skillsQuery RCSB PDB for experimental protein structures. Use when user asks about crystal structures, X-ray, cryo-EM, NMR structures, or PDB IDs. Triggers on "pdb", "crystal structure", "cryo-em", "x-ray structure", "protein crystal", "experimental structure".Știință★ 214
- protein-docking-hdockssinder/bioinformatics-agent-skillsSubmits protein-protein docking jobs to the HDOCK server and retrieves the resulting Docking Score, Confidence Score, ligand RMSD and ranked complex models. Uses plain HTTP form submission against the HDOCK server rather than browser automation, supports PDB files, PDB ID:ChainID references and FASTA sequences for both receptor and ligand, records submitted jobs to a CSV so results can be collected later, and can poll for completion. This skill should be used when running protein-protein complex structure prediction on the HDOCK server, checking the docking score of a submitted complex, or downloading top-ranked docked models is requested.Știință★ 75
Note și recenzii
—
nicio recenzie
Ai încercat acest skill? Notează-l ca să-i ajuți pe alții. Autentifică-te
Discuție
Intră în discuție. Autentifică-te