alterlab-histolab
De la autor
Extract and preprocess tiles from whole-slide images (WSI) with histolab — OpenSlide-backed slide loading, tissue detection and masks, Random/Grid/Score tile extraction, and image/morphological filters for H&E preprocessing. Use when the user needs lightweight WSI slide preprocessing — building tile datasets for ML training, tissue segmentation, or quick tile-based inspection of histopathology slides. For end-to-end computational-pathology, deep-learning model training, nucleus segmentation, or multiplexed/spatial-proteomics (CODEX, Vectra) pipelines prefer alterlab-pathml instead. Part of the AlterLab Academic Skills suite.
Instalare
npx skills add AlterLab-IEU/AlterLab-Academic-Skills --skill alterlab-histolab -a claude-code
Se instalează în .claude/skills/alterlab-histolab/ · Fiecare comandă descarcă skill-ul direct de pe GitHub cu utilitarul open source skills.
Identic octet cu octet cu commit-ul scanat, cu licența depozitului și un fișier SOURCE.txt.
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Skill-uri similare
Cele mai apropiate de acesta prin ce fac și când sunt folosite.
- histolabK-Dense-AI/scientific-agent-skillsExtracts and preprocesses whole-slide histology image tiles with Histolab. Use for WSI inspection, tissue masks, random/grid/score-based tile extraction, H&E stain normalization, and tile dataset preparation. For multiplexed imaging or deep learning inference pipelines, use pathml.Documente★ 54.9K
- alterlab-pathmlAlterLab-IEU/AlterLab-Academic-SkillsRun full computational-pathology workflows with PathML — whole-slide-image (WSI) analysis across 160+ slide formats, multiplexed immunofluorescence (CODEX, Vectra, MERFISH), nucleus segmentation/classification (HoVer-Net, HACTNet), tissue- and cell-graph construction, HDF5 dataset management, and deep-learning model training on pathology data. Use when the user builds end-to-end deep-learning pathology pipelines, analyzes multiplexed or spatial-proteomics slides, or segments nuclei. For lightweight H&E slide preprocessing, tissue masking, or plain Random/Grid/Score tile extraction prefer alterlab-histolab instead. Part of the AlterLab Academic Skills suite.Documente★ 78
- histolab-wsi-processingjaechang-hits/SciAgent-SkillsWSI processing for digital pathology. Tissue detection, tile extraction (random, grid, score-based), filter pipelines for H&E/IHC. For dataset prep, tile-based DL, slide QC. Use pathml for multiplexed imaging.Documente★ 383
- pathmlforyourhealth111-pixel/Vibe-SkillsComputational pathology toolkit for analyzing whole-slide images (WSI) and multiparametric imaging data. Use this skill when working with histopathology slides, H&E stained images, multiplex immunofluorescence (CODEX, Vectra), spatial proteomics, nucleus detection/segmentation, tissue graph construction, or training ML models on pathology data. Supports 160+ slide formats including Aperio SVS, NDPI, DICOM, OME-TIFF for digital pathology workflows.Documente★ 3.8K
- digital-pathologyawslabs/hcls-agent-skillsGenerate correct code for whole-slide image (WSI) analysis using TIAToolbox and foundation models (H-optimus-0, UNI, Prov-GigaPath). Triggers on requests involving whole-slide images, WSI, digital pathology, histopathology, SVS/NDPI/pyramidal TIFF, tissue segmentation, patch extraction, stain normalization, H-optimus-0, TIAToolbox, CAMELYON16/17, SlideGraph, MIL aggregation, HoVer-Net, PanNuke, or SageMaker deployment of pathology models. Produces deterministic commands and Python snippets for slide-info inspection, tissue masking, tile extraction at specified mpp, foundation-model feature embedding, slide-level aggregation, and regulated cloud inference.DevOps★ 67
- alterlab-scientific-slidesAlterLab-IEU/AlterLab-Academic-SkillsBuilds slide decks for research talks as AI-generated slide images (Nano Banana Pro via OpenRouter), PowerPoint, or LaTeX Beamer, providing slide structure, design templates, timing guidance, and visual validation. Use when making conference presentations, seminar talks, research presentations, thesis-defense slides, or any scientific talk deck. For a research poster use alterlab-latex-posters or alterlab-pptx-posters; to auto-generate a narrated video from a paper use alterlab-paper-2-web. Part of the AlterLab Academic Skills suite.Documente★ 78
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