PhysioBench: A Unified Benchmark for Physiological Signal Question Answering

arXiv:2609.20836v1 Announce Type: new Abstract: Physiological signals support diverse clinical and monitoring tasks, yet existing physiological signal foundation models typically require task-specific adaptation for each task. Natural language provides a common interface for specifying different prediction objectives, but the ability of current models to follow such instructions across physiological signal modalities remains insufficiently evaluated. To address this gap, we introduce PhysioBench, a unified benchmark for physiological signal question answering. PhysioBench harmonizes annotations from 22 public datasets into 61.4 million questions across 30 tasks. Each question-answer pair is grounded in a signal segment and traceable to its source annotation. We evaluate 21 representative models, including large language models, vision-language models, time-series language models, and physiological signal foundation models under three complementary settings. The results show that none of the evaluated models achieves consistently strong performance across physiological signal modalities and tasks. The incorporation of natural language supports unified prediction across tasks, although performance remains sensitive to question formulation. Beyond these findings, PhysioBench offers an extensible platform for fine-grained analysis and future research on physiological signal understanding. Our codes are available at https://github.com/Leanna97/PhysioBench.

Abstract:Physiological signals support diverse clinical and monitoring tasks, yet existing physiological signal foundation models typically require task-specific adaptation for each task. Natural language provides a common interface for specifying different prediction objectives, but the ability of current models to follow such instructions across physiological signal modalities remains insufficiently evaluated. To address this gap, we introduce PhysioBench, a unified benchmark for physiological signal question answering. PhysioBench harmonizes annotations from 22 public datasets into 61.4 million questions across 30 tasks. Each question-answer pair is grounded in a signal segment and traceable to its source annotation. We evaluate 21 representative models, including large language models, vision-language models, time-series language models, and physiological signal foundation models under three complementary settings. The results show that none of the evaluated models achieves consistently strong performance across physiological signal modalities and tasks. The incorporation of natural language supports unified prediction across tasks, although performance remains sensitive to question formulation. Beyond these findings, PhysioBench offers an extensible platform for fine-grained analysis and future research on physiological signal understanding. Our codes are available at this https URL.

Computation and Language (cs.CL); Machine Learning (cs.LG)

arXiv:2609.20836 [cs.CL]

(or arXiv:2609.20836v1 [cs.CL] for this version)

https://doi.org/10.48550/arXiv.2609.20836 Focus to learn more arXiv-issued DOI via DataCite

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PhysioBench: A Unified Benchmark for Physiological Signal Question Answering

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